Basic Information
Locus ID:
CH09.292
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 4886207 | 4890363 | + | CH09.292 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 67,454.09 Da | 56.93 | 77.00 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 299 | 329 | 3.4E-6 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 342 | 367 | 7.9E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 159 | 211 | 5.7E-16 | - |
| Pfam | PF00023 | Ankyrin repeat | 225 | 245 | 0.03 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 127 | 395 | 1.12E-50 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 435 | 495 | 3.53E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 265 | 395 | 4.0E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 423 | 505 | 6.2E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 116 | 260 | 8.5E-34 | IPR036770 |
| SMART | SM00248 | ANK_2a | 190 | 219 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 298 | 327 | 1.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 8.6E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 224 | 254 | 0.49 | IPR002110 |
| SMART | SM00248 | ANK_2a | 341 | 373 | 0.0048 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 298 | 330 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 190 | 222 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 341 | 367 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 224 | 245 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 188 | 14.265156 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 245 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 298 | 327 | 12.22224 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 341 | 367 | 10.709951 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 15.38713 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 440 | 490 | 9.612443 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 455 | 464 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 314 | 328 | 2.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 158 | 173 | 2.1E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 605 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 2.25E-167 |
| RefSeq | XP_002465047.1 | probable E3 ubiquitin-protein ligase XBOS33 [Sorghum bicolor] | 1.1200000014615E-315 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 2.61E-295 | |
| TrEMBL | K4A6X5 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology