Basic Information
Locus ID:
CH09.2819
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 35219109 | 35234422 | - | CH09.2819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 292,678.88 Da | 47.96 | 75.00 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 2442 | 2536 | 9.45989E-12 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 1239 | 1548 | 1.45029E-86 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 264 | 611 | 1.26048E-80 | - |
| CDD | cd18793 | SF2_C_SNF | 1719 | 1805 | 5.76882E-19 | - |
| CDD | cd18793 | SF2_C_SNF | 814 | 956 | 5.00996E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 849 | 946 | 2.9E-11 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 278 | 688 | 1.3E-63 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 727 | 763 | 4.9E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 1253 | 1624 | 1.3E-67 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 221 | 611 | 2.34E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1223 | 1548 | 1.31E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 1003 | 1.62E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1556 | 1802 | 1.36E-20 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 726 | 778 | 1.57E-10 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 2440 | 2541 | 1.33E-8 | IPR021109 |
| Gene3D | G3DSA:3.40.50.10810 | - | 493 | 612 | 1.2E-27 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 711 | 778 | 1.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 371 | 480 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 1326 | 1549 | 8.6E-42 | IPR038718 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 2423 | 2558 | 3.2E-17 | IPR021109 |
| Gene3D | G3DSA:3.40.50.300 | - | 626 | 1007 | 4.0E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 1211 | 1295 | 5.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1563 | 1811 | 4.6E-25 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 235 | 328 | 1.8E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 1235 | 1529 | 3.4E-23 | IPR014001 |
| SMART | SM00487 | ultradead3 | 260 | 588 | 4.2E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 727 | 765 | 0.0013 | IPR001841 |
| SMART | SM00184 | ring_2 | 1660 | 1701 | 1.8 | IPR001841 |
| SMART | SM00490 | helicmild6 | 863 | 946 | 1.5E-15 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 401 | 573 | 12.602787 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1339 | 1510 | 13.156078 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 727 | 763 | 10.895954 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 842 | 999 | 14.019406 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1677 | 1686 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 742 | 751 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2182 | 2207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1998 | 2037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1998 | 2015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2285 | 2302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2167 | 2207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2273 | 2304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2017 | 2031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2077 | 2101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2348 | 2373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2078 | 2101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2346 | 2382 | - | - |
| Coils | Coil | Coil | 2283 | 2303 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 1.16E-248 |
| RefSeq | XP_025824278.1 | helicase-like transcription factor CHR28 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 1.12E-247 | |
| TrEMBL | A0A3L6PXE4 | Putative ATP-dependent helicase C17A2.12-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G20830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||