Basic Information
Locus ID:
CH09.2792
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 34974849 | 34975244 | + | CH09.2792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 14,400.61 Da | 57.79 | 57.41 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 36 | 80 | 8.00403E-9 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 36 | 84 | 1.8E-11 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 36 | 91 | 5.0E-9 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 35 | 131 | 9.600613 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.2 | BTB-POZ and MATH domain 2. | 2.73E-12 |
| RefSeq | XP_025825436.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum hallii] | 3.35E-21 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 3.61E-11 | |
| TrEMBL | A0A8T0Q862 | MATH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG363900 PE=4 SV=1 | 2.54E-26 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH05.1237, AH06.2058, AH08.728, AH08.759, BH08.738 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000485, gene-QYE76_000491 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G606100, Tel7E01G877400 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51292 |