Basic Information
Locus ID:
CH09.2747
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 34610212 | 34612341 | + | CH09.2747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 61,602.87 Da | 45.81 | 103.23 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 79 | 5.63E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 210 | 482 | 2.67E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 68 | 4.1E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 183 | 481 | 2.1E-6 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50710.1 | F-box/RNI-like/FBD-like domains-containing protein. | 6.63E-13 |
| RefSeq | XP_039772108.1 | putative FBD-associated F-box protein At3g50710 [Panicum virgatum] | 3.07E-160 |
| Q9SCQ5 | Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana OX=3702 GN=At3g50710 PE=4 SV=1 | 6.56E-12 | |
| TrEMBL | A0A3L6Q7Q9 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G22100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 21 | AH01.379, AH06.351, BH01.347, BH01.349, BH01.350, BH01.351 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0334820 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006876 |
| Poaceae | Oryza coarctata | 6 | Oco05G027310, Oco09G009330, Oco15G005400, Oco21G001910 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g25670.1, LOC_Os08g17110.1 |
| Poaceae | Paspalum vaginatum | 9 | gene-BS78_01G032200, gene-BS78_01G344200, gene-BS78_K091300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G001580, Chr12G033300, Chr23G004370 |