Basic Information
Locus ID:
CH09.2670
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 33615334 | 33621923 | - | CH09.2670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 159,260.44 Da | 42.72 | 79.80 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09076 | L1-EN | 409 | 620 | 3.71602E-28 | - |
| CDD | cd01650 | RT_nLTR_like | 895 | 1144 | 8.18979E-53 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 905 | 1142 | 7.6E-42 | IPR000477 |
| Pfam | PF00232 | Glycosyl hydrolase family 1 | 32 | 385 | 2.8E-103 | IPR001360 |
| Pfam | PF00232 | Glycosyl hydrolase family 1 | 1286 | 1370 | 2.6E-23 | IPR001360 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 21 | 385 | 4.66E-120 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1288 | 1370 | 6.6E-28 | IPR017853 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 826 | 1208 | 6.15E-22 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 414 | 607 | 1.53E-13 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 403 | 621 | 2.0E-23 | IPR036691 |
| Gene3D | G3DSA:3.30.70.270 | - | 940 | 1117 | 5.5E-8 | IPR043128 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 18 | 402 | 8.1E-140 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1272 | 1383 | 1.6E-29 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 882 | 1144 | 23.101923 | IPR000477 |
| ProSitePatterns | PS00653 | Glycosyl hydrolases family 1 N-terminal signature. | 38 | 52 | - | IPR033132 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 1293 | 1304 | 2.9E-12 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 1314 | 1331 | 2.9E-12 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 1338 | 1350 | 2.9E-12 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 329 | 343 | 2.9E-12 | IPR001360 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02850.2 | beta glucosidase 11. | 1.31E-138 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| B9FHH2 | Beta-glucosidase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU20 PE=2 SV=1 | 1.18E-202 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |