Basic Information
Locus ID:
CH09.250
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 4268017 | 4274286 | - | CH09.250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 110,109.42 Da | 39.03 | 72.23 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 834 | 928 | 4.12314E-12 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 832 | 933 | 5.44E-9 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 814 | 951 | 4.4E-17 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 101 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15900.1 | pleiotropic regulatory locus 1. Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. | 5.55E-7 |
| RefSeq | XP_039776984.1 | uncharacterized protein LOC120644422 isoform X2 [Panicum virgatum] | 9.96E-126 |
| Q42384 | Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1 | 5.51E-6 | |
| TrEMBL | A0A8T0XPJ4 | Peptidase A2 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG180977 PE=4 SV=1 | 1.67E-115 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |