Basic Information
Locus ID:
CH09.2490
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cobalamin synthesis protein cobW C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 31970560 | 31976226 | + | CH09.2490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 94,283.69 Da | 40.39 | 87.38 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 563 | 835 | 1.95803E-41 | - |
| CDD | cd03112 | CobW-like | 72 | 274 | 1.44126E-96 | - |
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 72 | 257 | 1.0E-53 | IPR003495 |
| Pfam | PF00400 | WD domain, G-beta repeat | 801 | 835 | 0.0066 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 660 | 696 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 712 | 750 | 0.014 | IPR001680 |
| Pfam | PF07683 | Cobalamin synthesis protein cobW C-terminal domain | 314 | 365 | 3.3E-5 | IPR011629 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 580 | 637 | 1.9E-5 | IPR024977 |
| SUPERFAMILY | SSF90002 | Hypothetical protein YjiA, C-terminal domain | 314 | 365 | 6.02E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 283 | 1.22E-34 | IPR027417 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 538 | 837 | 4.71E-60 | IPR011047 |
| Gene3D | G3DSA:3.30.1220.10 | - | 296 | 374 | 1.6E-16 | IPR036627 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 838 | 4.5E-121 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 69 | 276 | 4.9E-70 | IPR027417 |
| SMART | SM00320 | WD40_4 | 708 | 750 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 753 | 793 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 615 | 653 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 796 | 835 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 612 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 657 | 696 | 9.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 580 | 617 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 664 | 698 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 580 | 621 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 803 | 836 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 803 | 836 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 664 | 705 | 14.61889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 822 | 836 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 683 | 697 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 3.58E-230 |
| RefSeq | XP_034603811.1 | cell division cycle 20.2, cofactor of APC complex-like [Setaria viridis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 3.44E-229 | |
| TrEMBL | A0A3L6Q042 | CobW C-terminal domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM16G18840 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology