Basic Information
Locus ID:
CH09.2463
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 31763396 | 31766479 | - | CH09.2463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 34,336.37 Da | 31.25 | 85.11 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 69 | 7.2E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 83 | 2.85E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 77 | 9.2E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 8 | 77 | 0.006 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 81 | 10.070247 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 325 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 1.42E-98 |
| RefSeq | XP_039773755.1 | binding partner of ACD11 1-like [Panicum virgatum] | 4.86E-192 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 3.05E-64 | |
| TrEMBL | A0A3L6Q4M9 | Binding partner of ACD11 1-like OS=Panicum miliaceum OX=4540 GN=C2845_PM15G20410 PE=4 SV=1 | 3.84E-191 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology