halophFGD

Basic Information

Locus ID: CH09.2433

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Anaphase-promoting complex subunit 4 WD40 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH09	31557245	31560441	+	CH09.2433

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.24	42,100.42 Da	37.89	77.58	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	105	392	1.00074E-72	-
Pfam	PF00400	WD domain, G-beta repeat	229	265	0.0095	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	60	91	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	354	392	9.4E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	105	138	2.3E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	271	309	6.6E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	155	180	0.033	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	187	222	8.3E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	320	350	2.1E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	106	390	1.23E-65	IPR036322
Gene3D	G3DSA:2.130.10.10	-	56	395	2.3E-93	IPR015943
SMART	SM00320	WD40_4	353	392	2.7E-7	IPR001680
SMART	SM00320	WD40_4	312	350	6.1E-7	IPR001680
SMART	SM00320	WD40_4	99	138	4.2E-8	IPR001680
SMART	SM00320	WD40_4	141	180	0.0033	IPR001680
SMART	SM00320	WD40_4	56	96	0.0017	IPR001680
SMART	SM00320	WD40_4	183	222	2.3E-9	IPR001680
SMART	SM00320	WD40_4	225	267	0.072	IPR001680
SMART	SM00320	WD40_4	270	309	7.8E-7	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	360	397	11.945589	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	106	138	15.287253	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	148	189	9.439068	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	190	231	16.222963	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	277	310	9.889235	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	318	359	12.279615	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	360	397	12.780889	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	190	222	12.762857	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	235	276	8.837541	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	277	310	11.845179	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	318	350	9.889235	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	106	138	12.604675	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	63	105	9.472486	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	296	310	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	337	351	6.8E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	209	223	6.8E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	296	310	6.8E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	10	48	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	48	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14818 (ribosome assembly protein SQT1)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G71840.1	transducin family protein / WD-40 repeat family protein.	7.57E-65
RefSeq	NP_001167770.1	uncharacterized protein LOC100381463 [Zea mays]	4.63E-165
Swiss-Prot	O13982	Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25H1.08c PE=4 SV=1	2.52E-15
TrEMBL	A0A1E5VKY6	Angio-associated migratory cell protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013189 PE=4 SV=1	8.48E-177

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg27415
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13286, gene_21422
Amaranthaceae	Beta vulgaris	3	BVRB_5g115000, BVRB_6g133260, BVRB_9g219050
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13377, Sbi_jg52470
Amaranthaceae	Salicornia europaea	1	Seu_jg9371
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00013388
Amaranthaceae	Suaeda glauca	4	Sgl71153, Sgl71718, Sgl74735, Sgl75289
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001851, gene:ENSEOMG00000005094 ... gene:ENSEOMG00000012378, gene:ENSEOMG00000014044, gene:ENSEOMG00000027214, gene:ENSEOMG00000038975
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2BG0002820, CQ.Regalona.r1.2BG0002830 ... CQ.Regalona.r1.6AG0022540, CQ.Regalona.r1.6BG0023840, CQ.Regalona.r1.7AG0004140
Anacardiaceae	Pistacia vera	2	pistato.v30037180, pistato.v30037340
Apiaceae	Apium graveolens	2	Ag7G00170, Ag9G02767
Arecaceae	Cocos nucifera	1	scaffold003116G000040
Arecaceae	Phoenix dactylifera	1	gene-LOC103711604
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.196.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G07047
Brassicaceae	Arabidopsis thaliana	1	AT1G71840.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018505m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g26870.v2.2, SpUn0020_0100.v2.2
Brassicaceae	Brassica nigra	3	BniB03g040040.2N, BniB03g049660.2N, BniB05g069130.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1527, Ceq03G1529
Casuarinaceae	Casuarina glauca	2	Cgl03G1663, Cgl03G1664
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g01230
Dunaliellaceae	Dunaliella salina	3	Dusal.1815s00001.v1.0, Dusal.2803s00002.v1.0 ... Dusal.3080s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g06910, gene.Thate01g09720
Plantaginaceae	Plantago ovata	2	Pov_00007051, Pov_00030628
Plumbaginaceae	Limonium bicolor	3	Lb0G38178, Lb2G14336, Lb3G20589
Poaceae	Echinochloa crus-galli	3	AH08.2297, BH08.2437, CH09.2433
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0108500, gene-QOZ80_6BG0463510
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0116380.1, HORVU.MOREX.r3.3HG0230460.1
Poaceae	Lolium multiflorum	3	gene-QYE76_007844, gene-QYE76_034974, gene-QYE76_067822
Poaceae	Oryza coarctata	3	Oco05G020450, Oco06G021210, Oco16G012050
Poaceae	Oryza sativa	1	LOC_Os03g48090.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G130100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0204816, Pt_Chr0305097, Pt_Chr0604863
Poaceae	Sporobolus alterniflorus	6	Chr03G024010, Chr06G008860, Chr08G017490, Chr15G010410 ... Chr23G002560, Chr26G016770
Poaceae	Thinopyrum elongatum	2	Tel1E01G582900, Tel2E01G264500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG052710, gene_TRIDC1BG060340 ... gene_TRIDC2AG015590, gene_TRIDC2BG018750
Poaceae	Triticum aestivum	6	TraesCS1A02G358200.1, TraesCS1B02G374800.1 ... TraesCS1D02G363000.1, TraesCS2A02G126700.2, TraesCS2B02G148600.2, TraesCS2D02G129200.1
Poaceae	Zea mays	2	Zm00001eb139680_P001, Zm00001eb362180_P001
Poaceae	Zoysia japonica	2	nbis-gene-28048, nbis-gene-42254
Poaceae	Zoysia macrostachya	2	Zma_g12025, Zma_g28009
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.340, evm.TU.LG15.608
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02540
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.452
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-9802
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2261
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-18040
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.705
Rhizophoraceae	Kandelia obovata	1	Maker00003159
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9580
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18708
Salicaceae	Populus euphratica	3	populus_peu16674, populus_peu16680, populus_peu18837
Solanaceae	Lycium barbarum	3	gene-LOC132603144, gene-LOC132603240, gene-LOC132603241
Solanaceae	Solanum chilense	1	SOLCI003135100
Solanaceae	Solanum pennellii	1	gene-LOC107024210
Tamaricaceae	Reaumuria soongarica	1	gene_14874
Tamaricaceae	Tamarix chinensis	1	TC09G1221
Zosteraceae	Zostera marina	1	Zosma04g00080.v3.1