Basic Information
Locus ID:
CH09.2429
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 31526567 | 31527778 | - | CH09.2429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 42,363.79 Da | 52.37 | 62.28 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 169 | 212 | 9.16752E-19 | - |
| Pfam | PF13639 | Ring finger domain | 169 | 212 | 6.0E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 218 | 4.48E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 218 | 2.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 170 | 211 | 5.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 212 | 13.315446 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 403 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 5.9E-50 |
| RefSeq | XP_039819552.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Panicum virgatum] | 7.44E-199 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 4.84E-155 | |
| TrEMBL | A0A3L6Q8X4 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM15G20170 PE=4 SV=1 | 1.88E-200 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology