Basic Information
Locus ID:
CH09.2412
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 31403550 | 31410671 | + | CH09.2412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 172,210.20 Da | 42.79 | 100.94 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 336 | 624 | 1.22644E-100 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1282 | 1502 | 4.27542E-124 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 965 | 1259 | 4.84997E-96 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 650 | 850 | 1.16098E-109 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 336 | 603 | 4.0E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 997 | 1211 | 2.8E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 668 | 802 | 3.2E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1301 | 1449 | 4.0E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 965 | 1270 | 7.46E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 645 | 867 | 3.63E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 334 | 632 | 5.36E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1276 | 1510 | 1.58E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 928 | 1265 | 3.3E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 645 | 877 | 1.7E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 306 | 633 | 9.8E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1267 | 1520 | 2.1E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 677 | 850 | 1.6E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1310 | 1502 | 2.5E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 650 | 873 | 22.068937 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 338 | 616 | 33.183231 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 967 | 1247 | 37.145752 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1286 | 1518 | 17.213688 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 775 | 789 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 942 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 942 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_025823256.1 | putative ABC transporter C family member 15 [Panicum hallii] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3I9Y0 | ABC transporter C family member 15 OS=Panicum hallii OX=206008 GN=PAHAL_7G270200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology