Basic Information
Locus ID:
CH09.2321
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 30707527 | 30714639 | + | CH09.2321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 61,393.41 Da | 55.59 | 73.66 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 248 | 419 | 1.3E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 239 | 342 | 7.3E-42 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 344 | 417 | 1.8E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 544 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 3.54E-138 |
| RefSeq | XP_025826441.1 | ubiquitin fusion degradation protein 1 homolog [Panicum hallii] | 2.18E-210 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 8.61E-70 | |
| TrEMBL | A0A2T7CYZ7 | Ubiquitin fusion degradation protein 1 homolog OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G254400 PE=3 SV=1 | 2.99E-210 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology