Basic Information
Locus ID:
CH09.2122
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 28868890 | 28881281 | + | CH09.2122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 147,680.59 Da | 51.97 | 81.11 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 949 | 1308 | 8.97552E-174 | - |
| Pfam | PF00069 | Protein kinase domain | 952 | 1101 | 9.4E-36 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1182 | 1285 | 3.0E-20 | IPR000719 |
| Pfam | PF11955 | Plant organelle RNA recognition domain | 9 | 340 | 1.7E-90 | IPR021099 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 934 | 1307 | 2.0E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 949 | 1034 | 2.3E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1035 | 1107 | 2.3E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1180 | 1302 | 5.1E-35 | - |
| SMART | SM00220 | serkin_6 | 951 | 1285 | 6.6E-86 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 951 | 1285 | 43.735554 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1072 | 1084 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 930 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44830.1 | Protein kinase superfamily protein. | 8.96E-290 |
| RefSeq | XP_004956409.1 | serine/threonine-protein kinase D6PKL1 [Setaria italica] | 0 |
| Q39183 | Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana OX=3702 GN=D6PKL2 PE=1 SV=1 | 8.3E-217 | |
| TrEMBL | K3ZR90 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101784376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31276 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4482 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59145, Sbi_jg63488 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23413 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02539, Sgl07694 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013250, gene:ENSEOMG00000030639 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019020, CQ.Regalona.r1.3BG0019600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278300 |
| Apiaceae | Apium graveolens | 2 | Ag10G02981, Ag3G02840 |
| Arecaceae | Cocos nucifera | 1 | scaffold052065G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716987 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G29713 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006002m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1360 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g06270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1848 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006834 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1789, BH09.1970, CH09.2122 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0308540, gene-QOZ80_4BG0339520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0185640.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G012160, Oco08G011880 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G178100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G007360, Chr25G006120, Chr26G012400, Chr30G005930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G674400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG056760, gene_TRIDC2BG059640 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G392800.1.cds1, TraesCS2B02G410900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37244 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20171 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1049, evm.TU.LG21.701 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1108 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4080 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14707 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22201 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.577 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5646 |
| Salicaceae | Populus euphratica | 1 | populus_peu12348 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645516 |
| Solanaceae | Solanum chilense | 1 | SOLCI001227600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026594 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13496_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1351 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05090.v3.1 |