Basic Information
Locus ID:
CH09.2080
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 28511604 | 28515487 | - | CH09.2080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 41,067.85 Da | 39.31 | 76.35 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00018 | SH3 domain | 305 | 349 | 5.4E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 41 | 253 | 1.79E-26 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 264 | 355 | 2.84E-15 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 40 | 265 | 1.1E-13 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 303 | 355 | 2.3E-15 | - |
| SMART | SM00326 | SH3_2 | 301 | 356 | 3.7E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 298 | 357 | 19.37232 | IPR001452 |
| Coils | Coil | Coil | 239 | 259 | - | - |
| Coils | Coil | Coil | 188 | 208 | - | - |
| Coils | Coil | Coil | 144 | 171 | - | - |
| Coils | Coil | Coil | 215 | 235 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 1.9E-169 |
| RefSeq | XP_004976396.1 | SH3 domain-containing protein 2 [Setaria italica] | 1.41E-244 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 1.82E-168 | |
| TrEMBL | K3Y867 | SH3 domain-containing protein OS=Setaria italica OX=4555 GN=101779661 PE=4 SV=1 | 3.19E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology