Basic Information
Locus ID:
CH09.1999
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 27860548 | 27861330 | - | CH09.1999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 28,753.76 Da | 60.74 | 79.54 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 42 | 96 | 2.44765E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 44 | 94 | 5.7E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 107 | 2.05E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 158 | 7.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 94 | 1.6E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 95 | 12.533537 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 153 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 6.7E-32 |
| RefSeq | XP_039775040.1 | E3 ubiquitin-protein ligase RMA1H1-like [Panicum virgatum] | 1.01E-181 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 3.39E-36 | |
| TrEMBL | A0A8T0QNY7 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG260100 PE=4 SV=1 | 7.14E-180 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology