Basic Information
Locus ID:
CH09.1990
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 27802895 | 27807522 | + | CH09.1990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 86,044.51 Da | 63.95 | 64.93 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 310 | 629 | 3.39631E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 494 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 343 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 628 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 451 | 7.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 307 | 641 | 9.57E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 298 | 669 | 2.2E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 494 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 535 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 629 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 452 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 587 | 28.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 461 | 497 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 503 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 455 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 461 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 346 | 12.077406 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 331 | 345 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 331 | 345 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 439 | 453 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 1.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 9.85E-201 |
| RefSeq | XP_034603850.1 | WD repeat-containing protein 44-like isoform X2 [Setaria viridis] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 1.58E-51 | |
| TrEMBL | A0A4U6TVJ8 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G186300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology