Basic Information
Locus ID:
CH09.1879
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 26814132 | 26818678 | - | CH09.1879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 41,563.34 Da | 48.57 | 75.14 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 58 | 202 | 5.2E-19 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 221 | 2.88E-33 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 66 | 225 | 2.1E-25 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 57 | 221 | 28.976854 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 266 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 1.54E-66 |
| RefSeq | XP_034602749.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 [Setaria viridis] | 1.48E-203 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 1.49E-65 | |
| TrEMBL | A0A4U6TQ40 | NAC domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G145900v2 PE=4 SV=1 | 3.34E-202 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology