Basic Information
Locus ID:
CH09.1858
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD-like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 26622974 | 26637276 | - | CH09.1858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 278,094.53 Da | 50.11 | 77.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17734 | BRCT_Bard1_rpt1 | 2307 | 2384 | 2.52695E-28 | - |
| CDD | cd01647 | RT_LTR | 1396 | 1576 | 1.18183E-80 | - |
| CDD | cd00303 | retropepsin_like | 1110 | 1187 | 3.95348E-7 | - |
| CDD | cd09279 | RNase_HI_like | 1756 | 1834 | 2.29455E-27 | - |
| Pfam | PF13771 | PHD-like zinc-binding domain | 2179 | 2258 | 2.6E-8 | - |
| Pfam | PF00533 | BRCA1 C Terminus (BRCT) domain | 2316 | 2380 | 1.6E-7 | IPR001357 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1641 | 1699 | 2.2E-11 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 1760 | 1843 | 1.3E-11 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1414 | 1576 | 2.4E-21 | IPR000477 |
| SUPERFAMILY | SSF52113 | BRCT domain | 2418 | 2512 | 1.18E-8 | IPR036420 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1755 | 1842 | 9.74E-15 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1356 | 1719 | 2.11E-110 | IPR043502 |
| SUPERFAMILY | SSF52113 | BRCT domain | 2307 | 2410 | 1.74E-24 | IPR036420 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 2415 | 2511 | 3.0E-17 | IPR036420 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1357 | 1501 | 1.8E-60 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1586 | 1670 | 3.9E-20 | IPR043128 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 2304 | 2409 | 4.6E-29 | IPR036420 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1091 | 1200 | 6.2E-11 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1757 | 1898 | 2.2E-18 | IPR036397 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2135 | 2260 | 4.8E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.70.270 | - | 1439 | 1576 | 1.8E-60 | IPR043128 |
| SMART | SM00249 | PHD_3 | 2210 | 2258 | 2.2E-4 | IPR001965 |
| SMART | SM00292 | BRCT_7 | 2300 | 2383 | 9.9E-12 | IPR001357 |
| SMART | SM00292 | BRCT_7 | 2416 | 2511 | 0.0022 | IPR001357 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1752 | 1894 | 11.984324 | IPR002156 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 2414 | 2508 | 12.3659 | IPR001357 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1394 | 1576 | 8.916615 | IPR000477 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 2138 | 2258 | 23.297615 | IPR034732 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 2308 | 2393 | 16.566721 | IPR001357 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1999 | 2020 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2265 | 2290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1209 | 1259 | - | - |
| Coils | Coil | Coil | 2107 | 2127 | - | - |
| Coils | Coil | Coil | 992 | 1012 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04020.1 | breast cancer associated RING 1. Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | 2.65E-107 |
| RefSeq | XP_025825730.1 | BRCA1-associated RING domain protein 1-like isoform X2 [Panicum hallii] | 0 |
| F4I443 | BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BARD1 PE=1 SV=1 | 2.63E-106 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |