Basic Information
Locus ID:
CH09.1764
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 25931705 | 25950365 | + | CH09.1764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 72,732.92 Da | 52.16 | 71.65 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 26 | 253 | 8.81E-9 | IPR016024 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 568 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 4.45E-50 | |
| RefSeq | XP_034602583.1 | uncharacterized protein LOC117863099 [Setaria viridis] | 3.67E-293 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 4.42E-49 | |
| TrEMBL | A0A4U6TWQ4 | Tudor domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G165000v2 PE=4 SV=1 | 8.3E-292 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology