Basic Information
Locus ID:
CH09.1704
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 25536635 | 25547415 | + | CH09.1704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 69,684.56 Da | 55.97 | 58.10 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 167 | 217 | 5.59109E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 236 | 298 | 5.2E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 315 | 362 | 9.0E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 305 | 2.17E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 594 | 620 | 3.81E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 248 | 5.53E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 365 | 2.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 248 | 2.6E-18 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 593 | 622 | 3.2E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 294 | 549 | 6.3E-86 | - |
| SMART | SM00647 | ibrneu5 | 236 | 298 | 3.6E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 311 | 372 | 0.046 | IPR002867 |
| SMART | SM00547 | zf_4 | 596 | 620 | 0.0012 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 211 | 8.889546 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 163 | 376 | 50.698677 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 598 | 617 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 1.88E-298 |
| RefSeq | XP_004976056.1 | probable E3 ubiquitin-protein ligase ARI8 [Setaria italica] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 1.8E-297 | |
| TrEMBL | A0A3L6Q6S2 | RBR-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM15G12700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology