Basic Information
Locus ID:
CH09.1687
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 25404693 | 25405277 | + | CH09.1687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 20,644.25 Da | 66.37 | 84.59 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 64 | 113 | 4.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 63 | 119 | 1.39E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 118 | 5.6E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 113 | 8.978064 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 163 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004971884.1 | E3 ubiquitin-protein ligase RNF128 [Setaria italica] | 1.89E-90 |
| TrEMBL | A0A368R6J0 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_5G185500v2 PE=4 SV=1 | 4.27E-89 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH09.1386, AH09.1387, AH09.1454, BH09.1568, BH09.1569 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0311420, gene-QOZ80_4AG0312750 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G009150 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g41050.1, LOC_Os04g41070.1, LOC_Os04g41080.1 |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G337600, gene-BS78_03G158300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010060, Chr25G009600, Chr30G009440 |
| Poaceae | Zea mays | 8 | Zm00001eb078920_P001, Zm00001eb078930_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36940 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19953 |