Basic Information
Locus ID:
CH09.1649
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 25035768 | 25038206 | + | CH09.1649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 49,581.34 Da | 48.84 | 94.98 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 230 | 395 | 2.35E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 105 | 2.09E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 53 | 121 | 5.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 426 | 2.2E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 62 | 109 | 9.232525 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13960.1 | F-box/RNI-like superfamily protein. | 1.59E-8 |
| RefSeq | XP_002446938.1 | F-box/FBD/LRR-repeat protein At5g22660 [Sorghum bicolor] | 2.81E-85 |
| O23257 | Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana OX=3702 GN=At4g13960 PE=4 SV=1 | 6.37E-8 | |
| TrEMBL | A0A2T7DRK0 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G491500 PE=4 SV=1 | 6.78E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH09.1534, CH09.1649 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0312640 |