Basic Information
Locus ID:
CH09.1572
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 24344289 | 24359576 | + | CH09.1572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 174,496.67 Da | 50.64 | 78.95 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11660 | SANT_TRF | 1143 | 1185 | 2.15319E-10 | - |
| Pfam | PF08238 | Sel1 repeat | 1257 | 1278 | 28.0 | IPR006597 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 346 | 393 | 6.4E-5 | IPR005174 |
| Pfam | PF08238 | Sel1 repeat | 1382 | 1416 | 1.7E-6 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 1312 | 1344 | 1.4 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 1295 | 1310 | 0.85 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 1345 | 1380 | 1.4E-9 | IPR006597 |
| SUPERFAMILY | SSF81901 | HCP-like | 1264 | 1453 | 5.14E-38 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1178 | 1223 | 3.14E-5 | IPR036047 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 948 | 1023 | 3.79E-6 | IPR029071 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1139 | 1185 | 6.86E-8 | IPR009057 |
| Gene3D | G3DSA:1.10.246.220 | - | 1132 | 1187 | 8.7E-17 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1327 | 1484 | 2.8E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1226 | 1326 | 8.9E-11 | IPR011990 |
| SMART | SM00671 | sel1 | 1381 | 1416 | 3.0E-6 | IPR006597 |
| SMART | SM00671 | sel1 | 1345 | 1380 | 2.2E-10 | IPR006597 |
| SMART | SM00671 | sel1 | 1311 | 1344 | 3.0 | IPR006597 |
| SMART | SM00671 | sel1 | 1279 | 1310 | 10.0 | IPR006597 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 953 | 1017 | 8.567829 | IPR000626 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 1137 | 1185 | 9.659357 | IPR017930 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1542 | 1563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 843 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13820.1 | telomeric DNA binding protein 1. Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding domain in C-terminus that prefers the sequence TTTAGGG. | 6.33E-47 |
| RefSeq | XP_039819047.1 | telomere-binding protein 1-like [Panicum virgatum] | 0 |
| Q9LL45 | Telomere-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP1 PE=1 SV=2 | 2.47E-173 | |
| TrEMBL | A0A3L6Q807 | Telomere-binding protein 1-like isoform X3 OS=Panicum miliaceum OX=4540 GN=C2845_PM15G11710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5520, jg9495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3605 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013639 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42856, Sbi_jg45474 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11331 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002477 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35260, Sgl35273, Sgl40639 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003499, gene:ENSEOMG00000012582 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0004700, CQ.Regalona.r1.6BG0004910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30221740, pistato.v30295790 |
| Apiaceae | Apium graveolens | 1 | Ag5G02234 |
| Arecaceae | Cocos nucifera | 1 | scaffold000161G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698089 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1424.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G70590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018848m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g25750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g048380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1363 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1445 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03290 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g15720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.603 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022328, Pov_00034269 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37097, Lb4G24102 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4062, BH09.1461, CH09.1572 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313670, gene-QOZ80_4BG0344810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0175210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_044624, gene-QYE76_046834 |
| Poaceae | Oryza coarctata | 1 | Oco07G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g40030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G133100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302317, Pt_Chr0302369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G008820, Chr23G010670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G585300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048910, gene_TRIDC2BG051510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327700.1, TraesCS2B02G354300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36875 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19909 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.165 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g08120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.776 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26965 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12460 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15619 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.421 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002695 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11239 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17736 |
| Salicaceae | Populus euphratica | 3 | populus_peu07719, populus_peu21774, populus_peu21781 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625516, gene-LOC132641128 |
| Solanaceae | Solanum chilense | 1 | SOLCI000158400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008915, gene-LOC107019035 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22550_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1150 |
| Zosteraceae | Zostera marina | 1 | Zosma02g03160.v3.1 |