Basic Information
Locus ID:
CH09.1549
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 24151833 | 24157537 | + | CH09.1549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 82,407.50 Da | 40.40 | 83.67 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 3.47742E-171 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 645 | 3.22141E-161 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 357 | 641 | 4.9E-42 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 351 | 645 | 6.28E-52 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 335 | 4.19E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 336 | 2.5E-30 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 350 | 646 | 2.9E-54 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 336 | 32.648548 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 646 | 39.298912 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 1.96E-254 |
| RefSeq | XP_034604102.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Setaria viridis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 1.88E-253 | |
| TrEMBL | A0A1E5WGP0 | glycerophosphodiester phosphodiesterase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002453 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology