Basic Information
Locus ID:
CH09.1390
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 22716001 | 22717239 | - | CH09.1390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 43,169.65 Da | 74.92 | 71.14 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 191 | 234 | 4.93035E-17 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 234 | 7.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 240 | 6.36E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 240 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 233 | 7.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 234 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 298 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 2.46E-28 |
| RefSeq | XP_025822852.1 | RING-H2 finger protein ATL52-like [Panicum hallii] | 1.7E-129 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 2.4E-27 | |
| TrEMBL | A0A2T7CVQ0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G162200 PE=4 SV=1 | 5.69E-130 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology