Basic Information
Locus ID:
CH09.1288
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 21570236 | 21571703 | - | CH09.1288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 45,814.41 Da | 46.83 | 92.93 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 61 | 2.0E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 155 | 387 | 7.06E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 65 | 2.35E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 77 | 4.5E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 400 | 7.0E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 28 | 69 | 0.0024 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 58 | 9.497469 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004978016.1 | F-box protein At5g03100 [Setaria italica] | 2.88E-187 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 1.35E-24 | |
| TrEMBL | A0A4U6U322 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G114300v2 PE=4 SV=1 | 6.53E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology