Basic Information
Locus ID:
CH08.934
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 11931293 | 11933596 | + | CH08.934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 40,415.75 Da | 76.85 | 59.81 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 312 | 354 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 356 | 3.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 358 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 313 | 353 | 7.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 313 | 354 | 11.913911 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 225 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10650.1 | RING/U-box superfamily protein. | 2.64E-39 |
| RefSeq | XP_025819901.1 | E3 ubiquitin-protein ligase MBR2-like [Panicum hallii] | 8.78E-197 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 1.45E-29 | |
| TrEMBL | A0A2T7D551 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G081400 PE=4 SV=1 | 1.71E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH08.801, AH09.2204, BH08.846, BH09.2375, CH08.934 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0304900, gene-QOZ80_4BG0335860 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0193060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046124 |
| Poaceae | Oryza coarctata | 4 | Oco07G015150, Oco08G014650, Oco15G004780, Oco16G004480 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g51400.2, LOC_Os08g14320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G218200, gene-BS78_07G092900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301410 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr0G027810, Chr16G003160, Chr17G002770, Chr23G003680 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G738600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG062860, gene_TRIDC2BG066550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G437200.1, TraesCS2B02G456100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb071710_P002, Zm00001eb414540_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-48283, nbis-gene-53678, nbis-gene-5761 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21921, Zma_g22681, Zma_g23819 |