Basic Information
Locus ID:
CH08.897
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 11206535 | 11212679 | - | CH08.897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 50,813.36 Da | 43.62 | 84.38 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13854 | Kelch motif | 349 | 388 | 9.7E-5 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 293 | 338 | 3.6E-10 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 179 | 210 | 9.7E-9 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 237 | 286 | 9.3E-9 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 116 | 209 | 1.7E-11 | IPR015915 |
| SUPERFAMILY | SSF117281 | Kelch motif | 225 | 441 | 7.32E-33 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 98 | 3.6E-13 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 103 | 214 | 9.6E-14 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 102 | 8.8E-8 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 216 | 449 | 1.4E-40 | IPR015915 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51550.1 | Kelch repeat-containing F-box family protein. | 9.27E-146 |
| RefSeq | XP_004972525.1 | F-box/kelch-repeat protein At1g51550 isoform X1 [Setaria italica] | 0 |
| Q9C8K7 | F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana OX=3702 GN=At1g51550 PE=2 SV=1 | 8.92E-145 | |
| TrEMBL | A0A368RH87 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G017700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25110 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5520 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028623 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26817, Sbi_jg33746 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011688 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73556, Sgl77077 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008650, gene:ENSEOMG00000038901 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007540, CQ.Regalona.r1.9BG0007610 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131280 |
| Apiaceae | Apium graveolens | 1 | Ag9G01015 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G009770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707064 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3530.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G23413 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011439m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g031710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1004 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1050 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g30080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.669 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037414 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30147 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.772, BH08.816, CH08.897 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0622950, gene-QOZ80_8BG0651100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0696220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032430 |
| Poaceae | Oryza coarctata | 2 | Oco15G004580, Oco16G004290 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g13360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G090000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402850 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G027710, Chr16G003010, Chr17G002880, Chr29G009550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G505000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG039400, gene_TRIDC7BG032900 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G291800.1, TraesCS7B02G197900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb414270_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51267, nbis-gene-51268 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22665 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1202, evm.TU.LG12.541 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1672 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19866 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13596 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.63 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011830 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13251 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12362 |
| Salicaceae | Populus euphratica | 2 | populus_peu05969, populus_peu19829 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644912 |
| Solanaceae | Solanum chilense | 1 | SOLCI005093600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021333 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21238_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1878 |
| Zosteraceae | Zostera marina | 1 | Zosma02g23360.v3.1 |