Basic Information
Locus ID:
CH08.893
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 11156807 | 11157716 | - | CH08.893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 30,705.33 Da | 73.60 | 80.21 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 171 | 237 | 1.1E-14 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 238 | 4.97E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 166 | 245 | 1.1E-17 | IPR011333 |
| SMART | SM00225 | BTB_4 | 171 | 263 | 0.0037 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 171 | 241 | 16.920921 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 282 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03740.1 | BTB-POZ and MATH domain 4. | 3.59E-12 |
| RefSeq | XP_004974315.1 | BTB/POZ and MATH domain-containing protein 2 [Setaria italica] | 3.7E-49 |
| Q9SRV1 | BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=BPM4 PE=1 SV=1 | 3.57E-11 | |
| TrEMBL | K3YMF2 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101756957 PE=4 SV=1 | 8.36E-48 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH08.893.