Basic Information
Locus ID:
CH08.879
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 10928564 | 10929526 | - | CH08.879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 34,106.54 Da | 60.18 | 63.53 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 139 | 292 | 1.66705E-28 | IPR002083 |
| Pfam | PF00917 | MATH domain | 158 | 293 | 4.6E-4 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 135 | 186 | 4.58E-13 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 205 | 296 | 4.74E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 138 | 296 | 2.2E-30 | IPR008974 |
| SMART | SM00061 | math_3 | 143 | 275 | 5.5E-4 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 138 | 292 | 20.007399 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 208 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.2 | BTB/POZ/MATH-domains containing protein. | 6.73E-26 |
| RefSeq | XP_034599978.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 1.62E-40 |
| Q1EBV6 | BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=BPM5 PE=1 SV=1 | 1.12E-24 | |
| TrEMBL | A0A1E5VZY3 | BTB/POZ and MATH domain-containing protein 6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008319 PE=4 SV=1 | 2.87E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH08.879 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0509720, gene-QOZ80_8AG0617850 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032442 |
| Poaceae | Oryza coarctata | 1 | Oco16G004250 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G926700, Tel2E01G926900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG075810, gene_TRIDC2AG075860 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G543300.1.cds1, TraesCS2A02G543600.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22657 |