Basic Information
Locus ID:
CH08.853
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 10322968 | 10323937 | - | CH08.853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 31,958.21 Da | 45.43 | 92.43 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 36 | 151 | 3.37828E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 196 | 292 | 4.2E-11 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 177 | 292 | 7.22E-14 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 34 | 157 | 3.43E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 299 | 5.0E-18 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 33 | 155 | 2.0E-15 | IPR008974 |
| SMART | SM00225 | BTB_4 | 196 | 295 | 3.3E-8 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 34 | 150 | 13.81958 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 2.01E-26 |
| RefSeq | XP_025822267.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum hallii] | 8.84E-50 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 3.76E-25 | |
| TrEMBL | A0A835A861 | Speckle-type POZ protein OS=Digitaria exilis OX=1010633 GN=HU200_061141 PE=4 SV=1 | 8.87E-73 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.727, CH08.853 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_8AG0622660, gene-QOZ80_8AG0623230 ... |