Basic Information
Locus ID:
CH08.708
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 7709614 | 7711122 | - | CH08.708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 35,667.82 Da | 69.67 | 85.31 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 74 | 1.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 85 | 5.23E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 114 | 275 | 1.63E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 72 | 2.7E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 93 | 306 | 3.4E-13 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 72 | 9.894885 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 311 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52480.1 | RNI-like superfamily protein. | 1.33E-11 |
| RefSeq | XP_039853249.1 | putative F-box/LRR-repeat protein 22 [Panicum virgatum] | 2.31E-161 |
| TrEMBL | A0A8T0R8U7 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG179600 PE=4 SV=1 | 5.22E-160 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |