Basic Information
Locus ID:
CH08.631
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 6808975 | 6811066 | - | CH08.631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 24,819.69 Da | 50.44 | 104.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 108 | 150 | 1.1E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 59 | 104 | 8.7E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 160 | 222 | 7.3E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 108 | 151 | 1.75E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 59 | 106 | 1.06E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 163 | 221 | 2.3E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 159 | 223 | 8.6E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 109 | 156 | 2.3E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 55 | 108 | 9.6E-23 | - |
| SMART | SM00213 | ubq_7 | 163 | 222 | 0.0049 | IPR000626 |
| SMART | SM00213 | ubq_7 | 41 | 102 | 7.6E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 157 | 223 | 17.430416 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 113 | 155 | 10.22276 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 57 | 106 | 17.256214 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 62 | 82 | 4.0E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 83 | 104 | 4.0E-18 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 4.82E-37 |
| RefSeq | XP_043639974.1 | polyubiquitin 11-like [Erigeron canadensis] | 1.2E-37 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 4.87E-36 | |
| TrEMBL | A0A8T0RAV2 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_6KG092500 PE=4 SV=1 | 1.01E-39 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH08.631.