Basic Information
Locus ID:
CH08.625
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 6708044 | 6718167 | - | CH08.625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 50,261.91 Da | 46.69 | 89.56 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 331 | 406 | 5.5207E-55 | - |
| Pfam | PF00240 | Ubiquitin family | 333 | 404 | 4.9E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 5 | 72 | 1.3E-25 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 78 | 6.56E-26 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 330 | 407 | 5.08E-34 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 326 | 423 | 3.3E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 101 | 3.9E-35 | - |
| SMART | SM00213 | ubq_7 | 331 | 402 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 3 | 74 | 4.2E-25 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 331 | 406 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 3 | 78 | 26.815615 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 357 | 382 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 383 | 404 | 7.6E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 362 | 382 | 7.6E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 341 | 361 | 7.6E-38 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05320.1 | polyubiquitin 10. One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. | 9.38E-67 |
| RefSeq | XP_017614081.1 | PREDICTED: polyubiquitin 3-like [Gossypium arboreum] | 9.68E-70 |
| P69322 | Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2 | 9.08E-66 | |
| TrEMBL | A0A6P4MGG3 | polyubiquitin 3-like OS=Gossypium arboreum OX=29729 GN=LOC108459246 PE=4 SV=1 | 2.19E-68 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||