Basic Information
Locus ID:
CH08.618
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UTP18
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 6642946 | 6646935 | - | CH08.618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 46,904.48 Da | 51.65 | 69.53 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 76 | 344 | 6.5E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 338 | 2.1E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 336 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 199 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 110 | 85.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 402 | - | - |
| Coils | Coil | Coil | 39 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14050.1 | Transducin/WD40 repeat-like superfamily protein. | 1.55E-68 |
| RefSeq | XP_039853134.1 | U3 small nucleolar RNA-associated protein 18 homolog [Panicum virgatum] | 3.08E-194 |
| Q9FMU5 | U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1 | 1.5E-67 | |
| TrEMBL | A0A8T0R9T9 | WD_REPEATS_REGION domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG213535 PE=3 SV=1 | 1.15E-192 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||