Basic Information
Locus ID:
CH08.573
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 6243856 | 6245151 | - | CH08.573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 47,222.07 Da | 76.27 | 69.79 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 384 | 426 | 1.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 376 | 429 | 9.81E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 353 | 430 | 3.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 385 | 425 | 2.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 385 | 426 | 11.441815 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 385 | - | - |
| Coils | Coil | Coil | 305 | 325 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035819143.1 | uncharacterized protein LOC103642511 [Zea mays] | 2.05E-79 |
| TrEMBL | A0A2S3I0K8 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_6G051500 PE=4 SV=1 | 2.4E-141 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology