Basic Information
Locus ID:
CH08.572
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 6228959 | 6230293 | - | CH08.572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 47,916.66 Da | 66.84 | 85.11 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 386 | 428 | 8.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 382 | 434 | 1.44E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 368 | 436 | 1.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 388 | 427 | 5.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 388 | 428 | 11.132002 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 174 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035819143.1 | uncharacterized protein LOC103642511 [Zea mays] | 2.7E-74 |
| TrEMBL | A0A2T8IF76 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_6G051700 PE=4 SV=1 | 5.52E-202 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology