halophFGD

Basic Information

Locus ID: CH08.557

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Uncharacterized protein K02A2.6-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH08	6082766	6095731	-	CH08.557

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.99	235,198.33 Da	42.40	80.82	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	554	648	1.05913E-12	-
CDD	cd09279	RNase_HI_like	1279	1403	5.69919E-44	-
CDD	cd09274	RNase_HI_RT_Ty3	1142	1257	4.82558E-26	-
CDD	cd01647	RT_LTR	866	1046	4.35676E-80	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	1111	1208	6.6E-24	IPR041577
Pfam	PF17921	Integrase zinc binding domain	1531	1583	2.4E-8	IPR041588
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	884	1046	1.9E-21	IPR000477
Pfam	PF00665	Integrase core domain	1602	1698	5.2E-11	IPR001584
Pfam	PF13456	Reverse transcriptase-like	1283	1402	8.6E-23	IPR002156
SUPERFAMILY	SSF53098	Ribonuclease H-like	1598	1756	1.77E-39	IPR012337
SUPERFAMILY	SSF56672	DNA/RNA polymerases	826	1247	7.23E-123	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	552	653	6.0E-9	IPR021109
SUPERFAMILY	SSF53098	Ribonuclease H-like	1278	1400	4.68E-20	IPR012337
Gene3D	G3DSA:3.30.420.10	-	1592	1793	4.0E-51	IPR036397
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	827	971	9.0E-62	-
Gene3D	G3DSA:3.30.70.270	-	909	1046	9.0E-62	IPR043128
Gene3D	G3DSA:3.30.420.10	-	1280	1410	1.3E-28	IPR036397
Gene3D	G3DSA:2.40.70.10	Acid Proteases	535	667	3.9E-17	IPR021109
Gene3D	G3DSA:1.10.340.70	-	1493	1583	4.1E-13	-
Gene3D	G3DSA:3.30.70.270	-	1056	1139	4.8E-18	IPR043128
Gene3D	G3DSA:3.10.20.370	-	1140	1210	1.1E-8	-
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1598	1758	22.64184	IPR001584
ProSiteProfiles	PS50879	RNase H domain profile.	1275	1404	12.459872	IPR002156
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	864	1046	8.83462	IPR000477
MobiDBLite	mobidb-lite	consensus disorder prediction	683	729	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	240	259	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	712	729	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	155	195	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	439	453	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	683	705	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1436	1474	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	463	480	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	155	206	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	437	480	-	-
Coils	Coil	Coil	397	417	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_050222931.1	uncharacterized protein LOC126673022 [Mercurialis annua]	0
Swiss-Prot	Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3	1.13E-45
TrEMBL	L0P3P1	PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	30	AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... BH03.2404, BH03.4279, BH04.1700, BH04.2314, BH07.2266, BH07.3065, BH08.1559, BH09.968, CH01.4222, CH02.2774, CH02.2789, CH03.1862, CH03.870, CH05.2682, CH05.4197, CH06.878, CH07.1301, CH07.1506, CH07.3848, CH08.557, CH09.1858, CH09.250, CH09.457, Contig522.18
Poaceae	Lolium multiflorum	2	gene-QYE76_053643, gene-QYE76_056610