Basic Information
Locus ID:
CH08.550
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 5990778 | 5992715 | + | CH08.550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 31,791.54 Da | 37.32 | 96.26 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 19 | 63 | 2.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 64 | 4.19E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 112 | 255 | 8.44E-17 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 60 | 4.8E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 286 | 2.0E-21 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 63 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52480.1 | RNI-like superfamily protein. | 5.74E-24 |
| RefSeq | XP_039853085.1 | putative F-box/LRR-repeat protein 23 [Panicum virgatum] | 3.73E-111 |
| TrEMBL | A0A8T0R9L9 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG081200 PE=4 SV=1 | 8.44E-110 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||