Basic Information
Locus ID:
CH08.548
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 5974562 | 5976435 | + | CH08.548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 28,339.42 Da | 44.85 | 88.96 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 18 | 62 | 8.2E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 107 | 238 | 5.49E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 67 | 2.49E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 59 | 8.2E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 242 | 3.5E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 62 | 8.676143 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05460.1 | RNI-like superfamily protein. | 3.43E-26 |
| RefSeq | XP_039853085.1 | putative F-box/LRR-repeat protein 23 [Panicum virgatum] | 1.87E-113 |
| Q9M0U9 | F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1 | 3.35E-25 | |
| TrEMBL | A0A8T0R9L9 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG081200 PE=4 SV=1 | 4.24E-112 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||