Basic Information
Locus ID:
CH08.491
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 5239959 | 5244720 | + | CH08.491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 65,256.32 Da | 49.43 | 77.95 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 388 | 425 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 570 | 5.76E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 241 | 581 | 1.2E-23 | IPR015943 |
| SMART | SM00667 | Lish | 11 | 43 | 8.9E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 5.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 282 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 260.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 434 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 426 | 9.783781 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 11 | 43 | 10.010189 | IPR006594 |
| Coils | Coil | Coil | 115 | 135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 1.07E-90 |
| RefSeq | XP_006659155.1 | protein TOPLESS-RELATED PROTEIN 2 [Oryza brachyantha] | 2.39E-126 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 5.32E-127 | |
| TrEMBL | A0A0A9PRI2 | CTLH domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 5.08E-209 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |