Basic Information
Locus ID:
CH08.490
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 5179736 | 5191407 | + | CH08.490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 146,591.55 Da | 42.05 | 83.21 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 483 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 658 | 4.58E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1101 | 5.76E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 768 | 1105 | 5.8E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 541 | 681 | 3.8E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 535 | 2.2E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 5.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 965 | 999 | 220.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.023 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1001 | 1043 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 865 | 290.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.339666 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 11.009724 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025820676.1 | protein TPR2 [Panicum hallii] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7D3U2 | TOPLESS OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G043500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology