Basic Information
Locus ID:
CH08.390
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 4068514 | 4069719 | - | CH08.390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 25,646.44 Da | 48.85 | 70.21 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 57 | 3.9E-4 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 107 | 243 | 2.6E-18 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 59 | 4.45E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 86 | 3.1E-6 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 0.0087 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 8.914593 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56250.1 | phloem protein 2-B14. | 3.45E-15 |
| RefSeq | XP_025822177.1 | F-box protein PP2-B10-like [Panicum hallii] | 8.57E-110 |
| Q9C7K0 | F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1 | 3.4E-14 | |
| TrEMBL | A0A3L6PSR6 | Phloem-specific lectin OS=Panicum miliaceum OX=4540 GN=C2845_PM14G02640 PE=4 SV=1 | 5.17E-109 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology