Basic Information
Locus ID:
CH08.378
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 3960897 | 3962407 | - | CH08.378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 37,553.48 Da | 36.77 | 87.40 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 199 | 326 | 3.53E-5 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 183 | 333 | 1.6E-11 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24240.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 1.04E-11 |
| RefSeq | XP_034576304.1 | receptor kinase-like protein Xa21 [Setaria viridis] | 2.65E-56 |
| Q9LHP4 | LRR receptor-like serine/threonine-protein kinase RGI1 OS=Arabidopsis thaliana OX=3702 GN=RGI1 PE=1 SV=1 | 1.03E-10 | |
| TrEMBL | A0A368SKF9 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_9G250000v2 PE=4 SV=1 | 9.48E-56 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3142.V1.1, AsparagusV1_10.1839.V1.1 ... |
| Poaceae | Echinochloa crus-galli | 10 | AH03.1805, AH03.1806, AH03.1809, BH03.1944, BH05.3340 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0533730, gene-QOZ80_6AG0534220 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0243010.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_004864, gene-QYE76_004865, gene-QYE76_004866 ... |
| Poaceae | Oryza coarctata | 3 | Oco17G004050, Oco18G003980, Oco18G004020 |
| Poaceae | Oryza sativa | 13 | LOC_Os02g17180.1, LOC_Os02g38499.1, LOC_Os02g38589.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G172800, gene-BS78_02G173600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0200764, Pt_Chr0202521, Pt_Chr0504528, Pt_Chr0504530 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G003100, Tel5E01G336100, Tel6E01G504100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG000530 |
| Poaceae | Triticum aestivum | 14 | TraesCS3A02G310000.1, TraesCS5A02G062200.1.cds1 ... |