Basic Information
Locus ID:
CH08.2687
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 36943772 | 36945250 | - | CH08.2687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 53,943.37 Da | 58.15 | 70.65 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 274 | 311 | 1.2E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 186 | 252 | 4.8E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 188 | 9.54E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 258 | 2.18E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 322 | 4.35E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 248 | 491 | 6.6E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 193 | 1.1E-11 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 184 | 252 | 1.8E-8 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 106 | 325 | 29.290634 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 299 | 308 | - | IPR017907 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 1.84E-60 |
| RefSeq | XP_034601390.1 | probable E3 ubiquitin-protein ligase ARI7 [Setaria viridis] | 1.27E-164 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 1.79E-59 | |
| TrEMBL | A0A835E113 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_062107 PE=4 SV=1 | 1.5E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0602s00007.v1.0 |
| Poaceae | Echinochloa crus-galli | 4 | BH08.2499, BH09.577, CH08.2686, CH08.2687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0668950 |