Basic Information
Locus ID:
CH08.2686
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin conjugating enzyme binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 36940386 | 36941915 | - | CH08.2686 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 56,066.62 Da | 60.76 | 72.08 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 262 | 1.2E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 190 | 2.19E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 269 | 6.36E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 321 | 1.55E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 203 | 1.6E-13 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 258 | 496 | 4.9E-38 | - |
| SMART | SM00184 | ring_2 | 120 | 172 | 0.32 | IPR001841 |
| SMART | SM00184 | ring_2 | 287 | 324 | 1.2 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 266 | 333 | 0.66 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 193 | 262 | 2.3E-6 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 170 | 8.579733 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 116 | 337 | 29.230917 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 310 | 319 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 5.78E-76 |
| RefSeq | XP_034601390.1 | probable E3 ubiquitin-protein ligase ARI7 [Setaria viridis] | 1.17E-223 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 5.62E-75 | |
| TrEMBL | K3YL77 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G246700v2 PE=4 SV=1 | 1.24E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0602s00007.v1.0 |
| Poaceae | Echinochloa crus-galli | 4 | BH08.2499, BH09.577, CH08.2686, CH08.2687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0668950 |