Basic Information
Locus ID:
CH08.2626
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 36472886 | 36475895 | + | CH08.2626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 30,044.34 Da | 47.28 | 55.17 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 187 | 269 | 6.349E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 259 | 1.8E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 157 | 258 | 1.48E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 183 | 273 | 5.9E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 188 | 269 | 1.4E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 273 | 12.253338 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 1.54E-50 |
| RefSeq | XP_025821565.1 | RNA-binding protein 1-like [Panicum hallii] | 1.69E-140 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 3.81E-69 | |
| TrEMBL | A0A2T7DAF8 | RRM domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G280100 PE=4 SV=1 | 3.82E-139 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology