Basic Information
Locus ID:
CH08.2609
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 36339338 | 36340639 | + | CH08.2609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 47,560.96 Da | 54.20 | 73.49 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 35 | 69 | 1.9E-5 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 345 | 389 | 1.0E-8 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 69 | 6.41E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 34 | 71 | 2.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 112 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034605058.1 | uncharacterized protein LOC117865069 isoform X3 [Setaria viridis] | 2.03E-47 |
| TrEMBL | A0A3L6PK72 | DUF295 domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G20070 PE=4 SV=1 | 1.1E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.113.V1.1, AsparagusV1_07.512.V1.1 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1172, BH07.1248, CH08.2609 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2AG0108680, gene-QOZ80_2AG0108760 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0653210.1.CDS1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G116200 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G030960, Chr09G000120, Chr09G000130, Chr09G000140 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS6A02G048400.1.cds1, TraesCS6B02G065000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb237580_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-34140, nbis-gene-50953, nbis-gene-50955 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12567, Zma_g15362 |