Basic Information
Locus ID:
CH08.2547
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 35767968 | 35773643 | + | CH08.2547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 67,270.54 Da | 56.12 | 59.83 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 211 | 272 | 1.9E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 289 | 337 | 5.6E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 279 | 1.66E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 566 | 593 | 3.92E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 220 | 2.83E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 339 | 1.0E-17 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 563 | 594 | 1.3E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 268 | 531 | 3.3E-88 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 225 | 5.5E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 568 | 592 | 4.7E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 285 | 346 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 211 | 272 | 4.6E-21 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 188 | 9.066582 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 138 | 350 | 48.450813 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 566 | 594 | 8.467661 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 570 | 589 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 57 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 3.43E-246 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 3.29E-245 | |
| TrEMBL | A0A2S3I4E1 | RBR-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_6G288000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology