Basic Information
Locus ID:
CH08.251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 2567739 | 2574257 | + | CH08.251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 83,913.60 Da | 48.12 | 81.57 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 425 | 717 | 2.75458E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 459 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 639 | 674 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 680 | 717 | 2.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 505 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 419 | 717 | 8.85E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 682 | 738 | 1.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 416 | 681 | 1.7E-59 | IPR015943 |
| SMART | SM00668 | ctlh | 255 | 312 | 5.8E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 633 | 675 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 589 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 718 | 1.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 629 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 466 | 505 | 1.2E-7 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 222 | 254 | 8.152704 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 685 | 717 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 685 | 727 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 473 | 510 | 11.444681 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 255 | 312 | 9.535197 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 428 | 462 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 469 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 473 | 514 | 14.953072 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 447 | 461 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 705 | 719 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 447 | 461 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 662 | 676 | 3.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 3.01E-243 |
| RefSeq | XP_025820751.1 | WD repeat-containing protein 26 homolog [Panicum hallii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 2.89E-242 | |
| TrEMBL | A0A2T7D304 | WD repeat-containing protein 26 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G023500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology